Novel Xanthomonas Species From the Perennial Ryegrass Seed Microbiome - Assessing the Bioprotection Activity of Non-pathogenic Relatives of Pathogens.
Identifieur interne : 000094 ( Main/Exploration ); précédent : 000093; suivant : 000095Novel Xanthomonas Species From the Perennial Ryegrass Seed Microbiome - Assessing the Bioprotection Activity of Non-pathogenic Relatives of Pathogens.
Auteurs : Tongda Li [Australie] ; Ross Mann [Australie] ; Timothy Sawbridge [Australie] ; Jatinder Kaur [Australie] ; Desmond Auer [Australie] ; German Spangenberg [Australie]Source :
- Frontiers in microbiology [ 1664-302X ] ; 2020.
Abstract
The productivity of the Australian dairy industry is underpinned by pasture grasses, and importantly perennial ryegrass. The performance of these pasture grasses is supported by the fungal endophyte Epichloë spp. that has bioprotection activities, however, the broader microbiome is not well characterized. In this study, we characterized a novel bioprotectant Xanthomonas species isolated from perennial ryegrass (Lolium perenne L. cv. Alto). In vitro and in planta bioassays against key fungal pathogens of grasses (Sclerotium rolfsii, Drechslera brizae and Microdochium nivale) indicated strong bioprotection activities. A complete circular chromosome of ∼5.2 Mb was generated for three strains of the novel Xanthomonas sp. Based on the 16S ribosomal RNA gene, the strains were closely related to the plant pathogen Xanthomonas translucens, however, comparative genomics of 22 closely related xanthomonad strains indicated that these strains were a novel species. The comparative genomics analysis also identified two unique gene clusters associated with the production of bioprotectant secondary metabolites including one associated with a novel nonribosomal peptide synthetase and another with a siderophore. The analysis also identified genes associated with an endophytic lifestyle (e.g., Type VI secretion system), while no genes associated with pathogenicity were identified (e.g., Type III secretion system and effectors). Overall, these results indicate that these strains represent a novel, bioactive, non-pathogenic species of the genus Xanthomonas. Strain GW was the designated type strain of this novel Xanthomonas sp.
DOI: 10.3389/fmicb.2020.01991
PubMed: 32983016
PubMed Central: PMC7479056
Affiliations:
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Bundoora, VIC, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>School of Applied Systems Biology, La Trobe University, Bundoora, VIC</wicri:regionArea><wicri:noRegion>VIC</wicri:noRegion></affiliation></author><author><name sortKey="Kaur, Jatinder" sort="Kaur, Jatinder" uniqKey="Kaur J" first="Jatinder" last="Kaur">Jatinder Kaur</name><affiliation wicri:level="1"><nlm:affiliation>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC</wicri:regionArea><wicri:noRegion>VIC</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>DairyBio, Bundoora, VIC, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>DairyBio, Bundoora, VIC</wicri:regionArea><wicri:noRegion>VIC</wicri:noRegion></affiliation></author><author><name sortKey="Auer, Desmond" sort="Auer, Desmond" uniqKey="Auer D" first="Desmond" last="Auer">Desmond Auer</name><affiliation wicri:level="1"><nlm:affiliation>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC</wicri:regionArea><wicri:noRegion>VIC</wicri:noRegion></affiliation></author><author><name sortKey="Spangenberg, German" sort="Spangenberg, German" uniqKey="Spangenberg G" first="German" last="Spangenberg">German Spangenberg</name><affiliation wicri:level="1"><nlm:affiliation>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC</wicri:regionArea><wicri:noRegion>VIC</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>DairyBio, Bundoora, VIC, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>DairyBio, Bundoora, VIC</wicri:regionArea><wicri:noRegion>VIC</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>School of Applied Systems Biology, La Trobe University, Bundoora, VIC</wicri:regionArea><wicri:noRegion>VIC</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in microbiology</title><idno type="ISSN">1664-302X</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The productivity of the Australian dairy industry is underpinned by pasture grasses, and importantly perennial ryegrass. The performance of these pasture grasses is supported by the fungal endophyte <i>Epichloë</i> spp. that has bioprotection activities, however, the broader microbiome is not well characterized. In this study, we characterized a novel bioprotectant <i>Xanthomonas</i> species isolated from perennial ryegrass (<i>Lolium perenne</i> L. cv. Alto). <i>In vitro</i> and <i>in planta</i> bioassays against key fungal pathogens of grasses (<i>Sclerotium rolfsii</i>, <i>Drechslera brizae</i> and <i>Microdochium nivale</i>) indicated strong bioprotection activities. A complete circular chromosome of ∼5.2 Mb was generated for three strains of the novel <i>Xanthomonas</i> sp. Based on the 16S ribosomal RNA gene, the strains were closely related to the plant pathogen <i>Xanthomonas translucens</i>, however, comparative genomics of 22 closely related xanthomonad strains indicated that these strains were a novel species. The comparative genomics analysis also identified two unique gene clusters associated with the production of bioprotectant secondary metabolites including one associated with a novel nonribosomal peptide synthetase and another with a siderophore. The analysis also identified genes associated with an endophytic lifestyle (e.g., Type VI secretion system), while no genes associated with pathogenicity were identified (e.g., Type III secretion system and effectors). Overall, these results indicate that these strains represent a novel, bioactive, non-pathogenic species of the genus <i>Xanthomonas</i>. Strain GW was the designated type strain of this novel <i>Xanthomonas</i> sp.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32983016</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-302X</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Frontiers in microbiology</Title><ISOAbbreviation>Front Microbiol</ISOAbbreviation></Journal><ArticleTitle>Novel <i>Xanthomonas</i> Species From the Perennial Ryegrass Seed Microbiome - Assessing the Bioprotection Activity of Non-pathogenic Relatives of Pathogens.</ArticleTitle><Pagination><MedlinePgn>1991</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fmicb.2020.01991</ELocationID><Abstract><AbstractText>The productivity of the Australian dairy industry is underpinned by pasture grasses, and importantly perennial ryegrass. The performance of these pasture grasses is supported by the fungal endophyte <i>Epichloë</i> spp. that has bioprotection activities, however, the broader microbiome is not well characterized. In this study, we characterized a novel bioprotectant <i>Xanthomonas</i> species isolated from perennial ryegrass (<i>Lolium perenne</i> L. cv. Alto). <i>In vitro</i> and <i>in planta</i> bioassays against key fungal pathogens of grasses (<i>Sclerotium rolfsii</i>, <i>Drechslera brizae</i> and <i>Microdochium nivale</i>) indicated strong bioprotection activities. A complete circular chromosome of ∼5.2 Mb was generated for three strains of the novel <i>Xanthomonas</i> sp. Based on the 16S ribosomal RNA gene, the strains were closely related to the plant pathogen <i>Xanthomonas translucens</i>, however, comparative genomics of 22 closely related xanthomonad strains indicated that these strains were a novel species. The comparative genomics analysis also identified two unique gene clusters associated with the production of bioprotectant secondary metabolites including one associated with a novel nonribosomal peptide synthetase and another with a siderophore. The analysis also identified genes associated with an endophytic lifestyle (e.g., Type VI secretion system), while no genes associated with pathogenicity were identified (e.g., Type III secretion system and effectors). Overall, these results indicate that these strains represent a novel, bioactive, non-pathogenic species of the genus <i>Xanthomonas</i>. Strain GW was the designated type strain of this novel <i>Xanthomonas</i> sp.</AbstractText><CopyrightInformation>Copyright © 2020 Li, Mann, Sawbridge, Kaur, Auer and Spangenberg.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Tongda</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>DairyBio, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mann</LastName><ForeName>Ross</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>DairyBio, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sawbridge</LastName><ForeName>Timothy</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>DairyBio, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kaur</LastName><ForeName>Jatinder</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>DairyBio, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Auer</LastName><ForeName>Desmond</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Spangenberg</LastName><ForeName>German</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>DairyBio, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>08</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Microbiol</MedlineTA><NlmUniqueID>101548977</NlmUniqueID><ISSNLinking>1664-302X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Xanthomonas</Keyword><Keyword MajorTopicYN="N">bioprotection</Keyword><Keyword MajorTopicYN="N">microbiome</Keyword><Keyword MajorTopicYN="N">non-pathogenic</Keyword><Keyword MajorTopicYN="N">perennial ryegrass</Keyword><Keyword MajorTopicYN="N">secondary metabolite</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>04</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>07</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>9</Month><Day>28</Day><Hour>5</Hour><Minute>40</Minute></PubMedPubDate><PubMedPubDate 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sortKey="Li, Tongda" sort="Li, Tongda" uniqKey="Li T" first="Tongda" last="Li">Tongda Li</name><name sortKey="Mann, Ross" sort="Mann, Ross" uniqKey="Mann R" first="Ross" last="Mann">Ross Mann</name><name sortKey="Mann, Ross" sort="Mann, Ross" uniqKey="Mann R" first="Ross" last="Mann">Ross Mann</name><name sortKey="Sawbridge, Timothy" sort="Sawbridge, Timothy" uniqKey="Sawbridge T" first="Timothy" last="Sawbridge">Timothy Sawbridge</name><name sortKey="Sawbridge, Timothy" sort="Sawbridge, Timothy" uniqKey="Sawbridge T" first="Timothy" last="Sawbridge">Timothy Sawbridge</name><name sortKey="Sawbridge, Timothy" sort="Sawbridge, Timothy" uniqKey="Sawbridge T" first="Timothy" last="Sawbridge">Timothy Sawbridge</name><name sortKey="Spangenberg, German" sort="Spangenberg, German" uniqKey="Spangenberg G" first="German" last="Spangenberg">German Spangenberg</name><name sortKey="Spangenberg, German" sort="Spangenberg, German" uniqKey="Spangenberg G" first="German" last="Spangenberg">German 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